2,930 research outputs found

    Structure of d(TGCGCA)(2) and a comparison with other DNA Hexamers

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    The X-ray crystal structure of d(TGCGCA)(2) has been determined at 120 K to a resolution of 1.3 Angstrom. Hexamer duplexes, in the Z-DNA conformation, pack in an arrangement similar to the 'pure spermine form' [Egli et al. (1991). Biochemistry, 30, 11388-11402] but with significantly different cell dimensions. The phosphate backbone exists in two equally populated discrete conformations at one nucleotide step, around phosphate 11. The structure contains two ordered cobalt hexammine molecules which have roles in stabilization of both the Z-DNA conformation of the duplex and in crystal packing. A comparison of d(TGCGCA)(2) with other Z-DNA hexamer structures available in the Nucleic Acid Database illustrates the elusive nature of crystal packing. A review of the interactions with the metal cations Na+, Mg2+ and Co3+ reveals a relatively small proportion of phosphate binding and that close contacts between metal ions are common. A prediction of the water structure is compared with the observed pattern in the reported structure

    The Structure and Construction of Formal Research Networks: a Policy Oriented Understanding of Stakeholder Engagement

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    ven the complexity of the modern research environment, funders (usually government agencies) are encouraging the formation of formal research networks (FRNs). FRNs have a predictable structure which includes primary and (whether acknowledged or not) secondary stakeholders as participants. Policy and program managers need to understand the larger structure, not just the internal operations, of the networks. We propose the use of actor-network theory to understand the strategy and construction of FRNs, and in particular to understand the specific problems surrounding FRNs for social science sand humanities research.   &nbsp

    Capturing the Outcomes and Impacts of Publicly Funded Research

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    Research granting agencies in Canada have increasingly turned to formal research networks (those with an organizational structure and mandate) such as NCEs and MCRIs as a mechanism to meet policy objectives such as collaboration, multi-disciplinarily and more importantly, the linking of researchers and perceived relevant stakeholder communities (industry and population groups). The project by Lewis, Holbrook and Wixted, has developed an approach to evaluate the core policy objective of networks

    The metallogenic evolution of the Greater Antilles

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    The Greater Antilles host some of the world's most important deposits of bauxite and lateritic nickel as well as significant resources of gold and silver, copper, zinc, manganese, cobalt and chromium. Beginning in Jurassic time, sedimentary exhalative base metal deposits accumulated in marine sedimentary rift basins as North and South America drifted apart. With the onset of intraoceanic subduction during the Early Cretaceous, a primitive (tholeiitic) island arc formed above a southwesterly-dipping subduction zone. Podiform chromite deposits formed in the mantle portion of the supra-subduction zone, directly above subducted Proto-Caribbean oceanic lithosphere. Within the nascent island arc, bimodal-mafic volcanogenic massive sulfide deposits formed in a fore-arc setting; mafic volcanogenic massive sulfide deposits formed later in mature back-arc basins. The Pueblo Viejo gold district, with five million ounces in production and twenty million ounces in mineable reserves, formed at 108-112Ma, in an apical rift or back-arc setting. By Late Cretaceous time, calc-alkaline volcanism was well established along the entire length of the Greater Antilles. Volcanogenic massive sulfide deposits including shallow submarine deposits characteristic of the primitive island arc gave way to porphyry copper and epithermal precious metal deposits typical of the mature island arc. Oblique collision of the Greater Antilles with North America began in the Late Cretaceous in Cuba and migrated eastward. Orogenic gold and tungsten deposits that formed during the collision event are preserved in ophiolites and in metamorphic core complexes. Since the Eocene, regional tectonism has been dominated by strike-slip motion as the North American continent moved westward relative to the Caribbean Plate. Large nickel-cobalt laterite deposits were formed when serpentinites were exposed to weathering and erosion during the mid-Tertiary. Bauxite deposits were derived from the weathering of volcanic ash within a carbonate platform of Eocene to Miocene age

    Asymptotic description of transients and synchronized states of globally coupled oscillators

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    A two-time scale asymptotic method has been introduced to analyze the multimodal mean-field Kuramoto-Sakaguchi model of oscillator synchronization in the high-frequency limit. The method allows to uncouple the probability density in different components corresponding to the different peaks of the oscillator frequency distribution. Each component evolves toward a stationary state in a comoving frame and the overall order parameter can be reconstructed by combining them. Synchronized phases are a combination of traveling waves and incoherent solutions depending on parameter values. Our results agree very well with direct numerical simulations of the nonlinear Fokker-Planck equation for the probability density. Numerical results have been obtained by finite differences and a spectral method in the particular case of bimodal (symmetric and asymmetric) frequency distribution with or without external field. We also recover in a very easy and intuitive way the only other known analytical results: those corresponding to reflection-symmetric bimodal frequency distributions near bifurcation points.Comment: Revtex,12 pag.,9 fig.;submitted to Physica

    Determination of step--edge barriers to interlayer transport from surface morphology during the initial stages of homoepitaxial growth

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    We use analytic formulae obtained from a simple model of crystal growth by molecular--beam epitaxy to determine step--edge barriers to interlayer transport. The method is based on information about the surface morphology at the onset of nucleation on top of first--layer islands in the submonolayer coverage regime of homoepitaxial growth. The formulae are tested using kinetic Monte Carlo simulations of a solid--on--solid model and applied to estimate step--edge barriers from scanning--tunneling microscopy data on initial stages of Fe(001), Pt(111), and Ag(111) homoepitaxy.Comment: 4 pages, a Postscript file, uuencoded and compressed. Physical Review B, Rapid Communications, in press

    Ophiolite-Related Ultramafic Rocks (Serpentinites) in the Caribbean Region: A Review of their Occurrence, Composition, Origin, Emplacement and Ni-Laterite Soil Formation

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    Ultramafic rocks, mainly serpentinized peridotites of mantle origin, are mostly associated with the ophiolites of Mesozoic age that occur in belts along three of the margins of the Caribbean plate. The most extensive exposures are in Cuba. The ultramafic-mafic association (ophiolites) were formed and emplaced in several different tectonic environments. Mineralogical studies of the ultramafic rocks and the chemistry of the associated mafic rocks indicate that most of the ultramafic-mafic associations in both the northern and southern margins of the plate were formed in arc-related environments. There is little mantle peridotite exposed in the ophiolitic associations of the west coast of Central America, in the south Caribbean in Curacao and in the Andean belts in Colombia. In these occurrences the chemistry and age of the mafic rocks indicates that this association is mainly part of the 89 Ma Caribbean plateau province. The age of the mantle peridotites and associated ophiolites is probably mainly late Jurassic or Early Cretaceous. Emplacement of the ophiolites possibly began in the Early Cretaceous in Hispaniola and Puerto Rico, but most emplacement took place in the Late Cretaceous to Eocene (e.g. Cuba). Along the northern South America plate margin, in the Caribbean mountain belt, emplacement was by major thrusting and probably was not completed until the Oligocene or even the early Miocene. Caribbean mantle peridotites, before serpentinization, were mainly harzburgites, but dunites and lherzolites are also present. In detail, the mineralogical and chemical composition varies even within one ultramafic body, reflecting melting processes and peridotite/melt interaction in the upper mantle. At least for the northern Caribbean, uplift (postemplacement tectonics) exposed the ultramafic massifs as a land surface to effective laterization in the beginning of the Miocene. Tectonic factors, determining the uplift, exposing the peridotites to weathering varied. In the northern Caribbean, in Guatemala, Jamaica, and Hispaniola, uplift occurred as a result of transpresional movement along pre-existing major faults. In Cuba, uplift occurred on a regional scale, determined by isostatic adjustment. In the south Caribbean, uplift of the Cordillera de la Costa and Serrania del Interior exposing the peridotites, also appears to be related to strike-slip movement along the El Pilar fault system. In the Caribbean, Ni-laterite deposits are currently being mined in the central Dominican Republic, eastern Cuba, northern Venezuela and northwest Colombia. Although apparently formed over ultramafic rocks of similar composition and under similar climatic conditions, the composition of the lateritic soils varies. Factors that probably determined these differences in laterite composition are geomorphology, topography, drainage and tectonics. According to the mineralogy of principal ore-bearing phases, Dominican Ni-laterite deposits are classified as the hydrous silicate-type. The main Ni-bearing minerals are hydrated Mg-Ni silicates (serpentine and “garnierite”) occurring deeper in the profile (saprolite horizon). In contrast, in the deposits of eastern Cuba, the Ni and Co occurs mainly in the limonite zone composed of Fe hydroxides and oxides as the dominant mineralogy in the upper part of the profile, and are classified as the oxide-type

    Petrogenesis of fertile mantle peridotites from the Monte del Estado massif (Southwest Puerto Rico): a preserved section of Proto-Caribbean lithospheric mantle?

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    The Monte del Estado massif is the largest and northernmost serpentinized peridotite belt in southwest Puerto Rico. It is mainly composed of spinel lherzolite and minor harzburgite with variable clinopyroxene modal abundances. Mineral and whole rock major and trace element compositions of peridotites coincide with those of fertile abyssal mantle rocks from mid ocean ridges. Peridotites lost 2-14 wt% of relative MgO and variable amounts of CaO by serpentinization and seafloor weathering. HREE contents in whole rock indicate that the Monte del Estado peridotites are residues after low to moderate degrees (2-15%) of fractional partial melting in the spinel stability field. However, very low LREE/HREE and MREE/HREE in clinopyroxene cannot be explained by melting models of a spinel lherzolite source and support that the Monte del Estado peridotites experienced initial low fractional melting degrees (~ 4%) in the garnet stability field. The relative enrichment of LREE in whole rock is not due to alteration processes but probably reflects the capture of percolating fluid/melt fractions or the crystallization of sub-percent amounts of hydrous minerals (e.g., amphibole, phlogopite) along grain boundaries or as microinclusions in minerals. We propose that the Monte del Estado peridotite belt represents a section of ancient Proto-Caribbean (Atlantic) lithospheric mantle originated by seafloor spreading between North and South America in the Late Jurassic- Early Cretaceous. This portion of oceanic lithospheric mantle was subsequently trapped in the forearc region of the Greater Antilles paleo-island arc generated by the northward subduction of the Caribbean plate beneath the Proto-Caribbean ocean. Finally, the Monte del Estado peridotites belt was emplaced in the Early Cretaceous probably as result of the change in subduction polarity of the Greater Antilles paleo-island arc without having been significantly modified by subduction processes

    Clinical Psychologists Training and Supervising IAPT Therapists to Work with Long-term Conditions and Medically Unexplained Symptoms: A Service Development Project

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    An IAPT service and a clinical health psychology team piloted a service development providing Step 2 and Step 3 services for individuals with long-term health conditions. Results indicate that such services may be offered with access to specialist training and supervision
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